LeastSqFitter1d.h

Go to the documentation of this file.

// -*- LSST-C++ -*-
 
/*
 * LSST Data Management System
 * Copyright 2008, 2009, 2010 LSST Corporation.
 *
 * This product includes software developed by the
 * LSST Project (http://www.lsst.org/).
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the LSST License Statement and
 * the GNU General Public License along with this program.  If not,
 * see <http://www.lsstcorp.org/LegalNotices/>.
 */
 
#ifndef LEAST_SQ_FITTER_1D
#define LEAST_SQ_FITTER_1D
 
#include <cstdio>
#include <memory>
#include <vector>
 
#include "Eigen/Core"
#include "Eigen/SVD"
 
#include "lsst/pex/exceptions/Runtime.h"
#include "lsst/afw/math/FunctionLibrary.h"
 
namespace lsst {
namespace meas {
namespace astrom {
namespace sip {

 
template <class FittingFunc>
class LeastSqFitter1d {
public:
    LeastSqFitter1d(const std::vector<double> &x, const std::vector<double> &y, const std::vector<double> &s,
                    int order);
 
    Eigen::VectorXd getParams();
    Eigen::VectorXd getErrors();
    FittingFunc getBestFitFunction();
    double valueAt(double x);
    std::vector<double> residuals();
 
    double getChiSq();
    double getReducedChiSq();
 
private:
    void initFunctions();
 
    double func1d(double value, int exponent);
 
    std::vector<double> _x, _y, _s;
    int _order;  // Degree of polynomial to fit, e.g 4=> cubic
    int _nData;  // Number of data points, == _x.size()
 
    Eigen::JacobiSVD<Eigen::MatrixXd> _svd;
    Eigen::VectorXd _par;
 
    std::vector<std::shared_ptr<FittingFunc> > _funcArray;
};
 
// The .cc part

template <class FittingFunc>
LeastSqFitter1d<FittingFunc>::LeastSqFitter1d(const std::vector<double> &x, const std::vector<double> &y,
                                              const std::vector<double> &s, int order)
        : _x(x), _y(y), _s(s), _order(order) {
    if (order == 0) {
        throw LSST_EXCEPT(pex::exceptions::RuntimeError, "Fit order must be >= 1");
    }
 
    _nData = _x.size();
    if (_nData != static_cast<int>(_y.size())) {
        throw LSST_EXCEPT(pex::exceptions::RuntimeError, "x and y vectors of different lengths");
    }
    if (_nData != static_cast<int>(_s.size())) {
        throw LSST_EXCEPT(pex::exceptions::RuntimeError, "x and s vectors of different lengths");
    }
 
    if (_nData < _order) {
        throw LSST_EXCEPT(pex::exceptions::RuntimeError, "Fewer data points than parameters");
    }
 
    initFunctions();
 
    Eigen::MatrixXd design(_nData, _order);
    Eigen::VectorXd rhs(_nData);
    for (int i = 0; i < _nData; ++i) {
        rhs[i] = y[i] / _s[i];
        for (int j = 0; j < _order; ++j) {
            design(i, j) = func1d(_x[i], j) / _s[i];
        }
    }
    _svd.compute(design, Eigen::ComputeThinU | Eigen::ComputeThinV);
    _par = _svd.solve(rhs);
}

template <class FittingFunc>
Eigen::VectorXd LeastSqFitter1d<FittingFunc>::getParams() {
    Eigen::VectorXd vec = Eigen::VectorXd::Zero(_order);
    for (int i = 0; i < _order; ++i) {
        vec(i) = _par(i);
    }
    return vec;
}

template <class FittingFunc>
Eigen::VectorXd LeastSqFitter1d<FittingFunc>::getErrors() {
    Eigen::ArrayXd variance(_order);
    for (int i = 0; i < _order; ++i) {
        variance[i] = _svd.matrixV().row(i).dot(
                (_svd.singularValues().array().inverse().square() * _svd.matrixV().col(i).array()).matrix());
    }
    return variance.sqrt().matrix();
}

template <class FittingFunc>
FittingFunc LeastSqFitter1d<FittingFunc>::getBestFitFunction() {
    // FittingFunc and LeastSqFitter disagree on the definition of order of a function.
    // LSF says that a linear function is order 2 (two coefficients), FF says only 1
    FittingFunc func(_order - 1);
 
    for (int i = 0; i < _order; ++i) {
        func.setParameter(i, _par(i));
    }
    return func;
}

template <class FittingFunc>
double LeastSqFitter1d<FittingFunc>::valueAt(double x) {
    FittingFunc f = getBestFitFunction();
 
    return f(x);
}

template <class FittingFunc>
std::vector<double> LeastSqFitter1d<FittingFunc>::residuals() {
    std::vector<double> out;
    out.reserve(_nData);
 
    FittingFunc f = getBestFitFunction();
 
    for (int i = 0; i < _nData; ++i) {
        out.push_back(_y[i] - f(_x[i]));
    }
 
    return out;
}

template <class FittingFunc>
double LeastSqFitter1d<FittingFunc>::getChiSq() {
    FittingFunc f = getBestFitFunction();
 
    double chisq = 0;
    for (int i = 0; i < _nData; ++i) {
        double val = _y[i] - f(_x[i]);
        val /= _s[i];
        chisq += pow(val, 2);
    }
 
    return chisq;
}

template <class FittingFunc>
double LeastSqFitter1d<FittingFunc>::getReducedChiSq() {
    return getChiSq() / (double)(_nData - _order);
}

template <class FittingFunc>
void LeastSqFitter1d<FittingFunc>::initFunctions() {
    _funcArray.reserve(_order);
 
    std::vector<double> coeff;
    coeff.reserve(_order);
 
    coeff.push_back(1.0);
    for (int i = 0; i < _order; ++i) {
        std::shared_ptr<FittingFunc> p(new FittingFunc(coeff));
        _funcArray.push_back(p);
        coeff[i] = 0.0;
        coeff.push_back(1.0);  // coeff now looks like [0,0,...,0,1]
    }
}
 
template <class FittingFunc>
double LeastSqFitter1d<FittingFunc>::func1d(double value, int exponent) {
    return (*_funcArray[exponent])(value);
}
 
}  // namespace sip
}  // namespace astrom
}  // namespace meas
}  // namespace lsst
 
#endif